PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00718.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 299aa    MW: 33213.4 Da    PI: 6.3702
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00718.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l+ +v+++G g W+t +++ g++R++k+c++rw +yl
  Rsa1.0_00718.1_g00009.1 14 KGAWTPEEDQKLIAYVQLHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 61
                             79********************************************97 PP

2Myb_DNA-binding50.64.5e-1667111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg +T+eEd+ ++++++++G++ W++Ia+ +  gRt++++k++w++ 
  Rsa1.0_00718.1_g00009.1  67 RGEFTPEEDDTIIKLHALMGNK-WAAIASSLA-GRTDNDIKNYWNTN 111
                              899*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.052961IPR017930Myb domain
SuperFamilySSF466891.8E-3011108IPR009057Homeodomain-like
SMARTSM007177.8E-141363IPR001005SANT/Myb domain
PfamPF002491.5E-161461IPR001005SANT/Myb domain
CDDcd001672.18E-101661No hitNo description
PROSITE profilePS5129425.34262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2665117IPR009057Homeodomain-like
SMARTSM007177.5E-1766114IPR001005SANT/Myb domain
PfamPF002493.2E-1567112IPR001005SANT/Myb domain
CDDcd001671.10E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVRTPCCKEE GIKKGAWTPE EDQKLIAYVQ LHGEGGWRTL PEKAGLKRCG KSCRLRWANY  60
LRPDIKRGEF TPEEDDTIIK LHALMGNKWA AIASSLAGRT DNDIKNYWNT NLKKRLKRKG  120
IDPITHKPIN PTGFQPINHK LGSSGSARLL NRVARKYAGD LNRELLTGII IRNSTIIADG  180
SRNSCEVHSP TTTLLNKTAA ISNAVTLNMF NNTSTSSSCS FSSDLDVLFS NEEMDNVALM  240
GELKSILSYG SADAGDNSPE FNVTDEMDFL DSWNEEDDLE KFVSSLDSKT GLFMSLSEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6156040.0HQ615604.1 Brassica rapa subsp. pekinensis cultivar A5-2-1 MYB34-3 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136410.11e-157PREDICTED: transcription factor MYB34
RefseqXP_013618713.11e-157PREDICTED: transcription factor MYB34-like
RefseqXP_013670352.11e-157PREDICTED: transcription factor MYB34-like
SwissprotO643991e-140MYB34_ARATH; Transcription factor MYB34
TrEMBLL8B7X01e-157L8B7X0_BRAOV; Myb transcription factor BoMyb34
STRINGBra013000.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93311637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60890.11e-137myb domain protein 34